Chromonomer: hmac2020

/var/www/bin/chromonomer --map hmac2020_linkage_map.tsv --fasta BW_2020_hmac_dovetail_assemblyV2.fasta --alns markers.bam --agp final.assembly.agp --out_path hmac2020/ --data_version hmac2020 /var/www/bin/chromonomer version 1.13 executed 2020-12-18 05:33:22 1151 scaffolds in the linkage map, from 1141 original scaffolds. Splits Num Scaffolds 0 1131 1 10 1278 markers in the final map; 286 inconsistent markers excluded. Chromosome lengths: LG1: 112,761,299bp LG10: 61,352,214bp LG11: 67,604,348bp LG12: 48,967,939bp LG13: 40,983,238bp LG14: 39,802,755bp LG15: 24,502,038bp LG16: 76,572,392bp LG17: 35,897,427bp LG18: 10,722,911bp LG19: 21,353,519bp LG2: 126,983,943bp LG20: 20,088,328bp LG21: 8,540,790bp LG22: 13,179,525bp LG23: 5,678,564bp LG24: 2,389,661bp LG25: 630,070bp LG26: 9,911,231bp LG27: 9,518,572bp LG28: 6,480,891bp LG29: 3,446,056bp LG3: 150,538,196bp LG30: 2,672,767bp LG31: 5,070,792bp LG32: 722,555bp LG33: 1,914,071bp LG34: 1,708,262bp LG35: 1,232,592bp LG36: 910,419bp LG37: 590,138bp LG38: 4,763,124bp LG39: 6,049bp LG4: 79,884,396bp LG40: 758,145bp LG41: 3,334,787bp LG42: 4,961,978bp LG43: 13,155bp LG44: 3,642,888bp LG45: 1,872,575bp LG46: 331,610bp LG47: 1,678,115bp LG5: 70,242,339bp LG6: 82,683,690bp LG7: 80,662,937bp LG8: 78,330,915bp LG9: 64,336,053bp Total length: 1,390,230,259bp